Genome Synteny Analyzer

 

Multi-genome synteny and gene cross-match analyzer

Click to get more info

Genes from up to 20 genomes can (currently) be compared one against each other:
1) Select appropriate genomes
2) Start analysis to perform cross-match computation (using DIAMOND B. Buchfink et al., Nature Methods 12, 59-60 (2015); https://github.com/bbuchfink/diamond)
and build link relations on all genes
3) Choose gene(s) of interest in the subsequently generated list and display gene's environements in their respective genomes
* as a bonus, display scatter plots on chosen chromosome pairs.
 
 Genomapper BLAST  psiBLAST  Mulalbla  Multalin  Genes & Genomes  BLAST (restricted)  Genome Guts  COG Guess  INTERPROScan  CDD search  Pattern search  Sequence Patterns  COG Trees  Genome Syntenizer

Complete Genomes DataBase selection

(Javascript must be activated)
Genome list last revision on 2017/08/01:13:17:46
Full Phylogenetic Domain selection: Select full phylogenetic domains or open genomes window to make custom selection

 ALL       BACTERIA                ARCHAEA                    EUKARYA            THERMOPHILES      
Taxonomy Name selection: Type valid taxonomy name - Suggested names appear as you type

         
Matches only full names
(Names for lineages are from NCBI Taxonomy data)
Taxa Tree selection: Browse taxonomy trees . Click on items to open/close nodes or open lineage selections

(Lineage data for tree construction is from NCBI Taxonomy data)
Tree Help
 Expand Bacteria tree   Expand Archaea tree Expand Eukarya tree Expand Thermophiles tree
 



 
Questions, comments & bug reports to : yvan.zivanovic@i2bc.paris-saclay.fr