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Multalin version 5.4.1

Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite :
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890


Input sequences:


 Enter sequences to align (use FASTA format):







Alignment Options:


  Gap value:

 Gap lenght value:


  Gap at extremities:   

  Scoring method:



  One iteration only:

  Symbol comparison table:


  Unweighted sequences:

   (gives all sequences a weight of 1.0.)



Output Options:



 Upercase consensus:

 (minimal %)

Lowercase consensus:

 (minimal %)


Output sequence ordering:  

Color sequence by:  


Characters per line:  

Show consensus : 



Scaling for graphical output: