LBMGE Genomapper

Genomapper BLAST psiBLAST Mulalbla Multalin Genes & Genomes BLAST (restricted) Genome Guts COG Guess INTERPROScan CDD search Pattern search Sequence Patterns COG Trees Genome Syntenizer

Pyrococcus abyssi >PAB1871 ABC-type periplasmic dipeptide transport protein MNRALLSLLLVGVLVLGTVASGCIGGGTQTQSPTQTASPTQTQTTTQPQGVTKAILELGKVTVVDTGTSIVVVGPKGAEP TVKIPSGKKVIRITYVVDEQKTPSVKKLMEEGQGFGAINPAFFRDTNVDALVIAARRETNPEIRTEIFKALYILGNYYVP EVILGQNRQLRVYWSWVKGRYYHPTLAERYDLLWEDKNAPVVPTGVGDYNNDPETYVIATFGWPESFDPAWTYETFGWEI WHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMV KTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVV PMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGH KRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAY AIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIYNAGNSQREKIMTLIQ NIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWVGPFLYGATEFKEINIETS

Supplementary options
Additional orf sequence data	See Genomic Environment
Search GenBank with PSI-Blast at NCBI	Search Complete Genomes DataBase with Blast at LBMGE
Search InterPro Database at LBMGE	Search CDD Database at LBMGE
Determine COG functional Category (microbial)	Determine COG functional Category (eukarial)
See this orf in P. abyssi Data Base

^__________ GenBank id: 14520954 Gene name: dppA COG: E COG0747 ABC-type dipeptide transport system, periplasmic component Taxon: 272844 Lineage: Archaea: Euryarchaeota: Thermococci: Thermococcales: Thermococcaceae: Pyrococcus: Pyrococcus abyssi: Pyrococcus abyssi GE5
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