LBMGE Genomapper

Genomapper BLAST psiBLAST Mulalbla Multalin Genes & Genomes BLAST (restricted) Genome Guts COG Guess INTERPROScan CDD search Pattern search Sequence Patterns COG Trees Genome Syntenizer

Pyrococcus abyssi >PAB2313 Probable ATP-dependent RNA helicase MLFVIRPGRKKGELEALVIENPPEKLSQIRNVKADRVLRLIMREGRLFKVLEGSQYRNPKEIEKLLRQSRIVLVNADEWE DYFKRRLMNKNVEKASLCRLCLLEGRITVLTEGNRIKYRGEYICERCAEEELKRELRARFNSIGMFEQAKRLLEKFRDLD KVLYAFDPRFDPTQHPEITKWDELKAKRIKVERMTIDELDIPEKFKDILKLEGIKELLPVQVLAIKSGLLEGENLLVVSA TASGKTLIGELAGIPKALNGKKMLFLVPLVALANQKYEDFRRRYSKLGLKVAIRVGMSRIKTREEPVVVDTGIDADIIVG TYEGIDYLLRAGKKIGNVGTIVIDEIHMLDDEERGPRLDGLIARLRKLYPGAQFIGLSATIGNPEELAKALGMKLVLYDE RPVDLERHLVIARNESEKWRLIAKLCKVEAMRRSSKGFKGQTIVFTYSRRRCHELASFLTGKGLKAKPYHSGLPYKQRKI TEMEFQAQMIDVVVTTAALGAGVDFPASQVIFESLAMGNKWLSVREFHQMLGRAGRPLYHEKGKVYLMVEPGRKYSAQME GTEDEVALKLLTSPIEPVIVEWSDEIEEDNVLAHACVFNRLSVIEEVNSLTLGANRSAEKVLEKLEELGMVKLHGGIVRV TPYGRATSMSFLLPREAEFIRENLDNMNPLDIAIMLSPFENAYLPGFLQREIESAVRGRISSNVFSSSFASVLEELDKII PEISPNAADKLFLIYQDFFNCPEEDCTEFAMLMMGKKIVELRRDGKEPSKISEHFRKVYGLILYPGDVFTWLDTLVRKLE AVQRIARVFGKRGAEMEAMIVQREIEEGRRFKGPRNNNLIGGEKSWRKVRRERKP

Supplementary options
Additional orf sequence data	See Genomic Environment
Search GenBank with PSI-Blast at NCBI	Search Complete Genomes DataBase with Blast at LBMGE
Search InterPro Database at LBMGE	Search CDD Database at LBMGE
Determine COG functional Category (microbial)	Determine COG functional Category (eukarial)
See this orf in P. abyssi Data Base

^__________ GenBank id: 14520271 Gene name: - COG: R COG1202 Superfamily II helicase, archaea-specific Taxon: 272844 Lineage: Archaea: Euryarchaeota: Thermococci: Thermococcales: Thermococcaceae: Pyrococcus: Pyrococcus abyssi: Pyrococcus abyssi GE5
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