LBMGE Genomapper

Genomapper BLAST psiBLAST Mulalbla Multalin Genes & Genomes BLAST (restricted) Genome Guts COG Guess INTERPROScan CDD search Pattern search Sequence Patterns COG Trees Genome Syntenizer

Pyrococcus abyssi >PAB2385 ERCC2/XPD/rad3 DNA repair helicase, TFIIH helicase beta subunit homolog MFEYFPYKTLRPHQDEFIELVRDVVKRGEKVIIEAPTGFGKTISVLAGVLPHAISFGYKVIYLARTHKQMDRVIEELKRI REIAKVSGIEFRSRKDLCLHSYIRTFAQDAYTSMIVCKSLKRLGKCKYFENLKEKRDKVKEIVEFFLENPSYPWEVIEYS NLLELCPYEVTRKVGEKANVIVASYLYMVNPWIRQAFLDGLGLEYSDLIVIFDEAHNLPDQAISALSDRLSIRSVERAIK EANEYGEKDIENFLSIFLRGLEIIYKEKLENYEISEVPLSPASIFEHVSSILGLRERDLLRFLQEMVEVGDAIREDKIER NLPPRSYVGRVGEFLWNWISLADRSDYLHVFTREKGLALEIVALDPSVALEFLEDVHSAILMSGTLSPLEAFRDIIGVNA RLKKFPRMVKSENAIVLVARDVSTRGEERSPVLYKKLAEYIFEAVKIIPKNVGVFTASYEVLEGLISTNVHIRIEEEIGK KVFIEKRDASSSENDALVAEFKAEAKGNGGVLFGVMGGRNSEGQDYSGDEMNGVILVGIPYARPTPRVQAQIRYYEKKFP GKGRYYGYLLPAHRKLAQAAGRVHRSEEEKGSIVILDYRVLWNTVKRDLPDWMVETMQPVTLPLMRIKLRKFWRAVK

Supplementary options
Additional orf sequence data	See Genomic Environment
Search GenBank with PSI-Blast at NCBI	Search Complete Genomes DataBase with Blast at LBMGE
Search InterPro Database at LBMGE	Search CDD Database at LBMGE
Determine COG functional Category (microbial)	Determine COG functional Category (eukarial)
See this orf in P. abyssi Data Base

^__________ GenBank id: 14521544 Gene name: - COG: KL COG1199 Rad3-related DNA helicases Taxon: 272844 Lineage: Archaea: Euryarchaeota: Thermococci: Thermococcales: Thermococcaceae: Pyrococcus: Pyrococcus abyssi: Pyrococcus abyssi GE5
^__________