LBMGE Genomapper

Genomapper BLAST psiBLAST Mulalbla Multalin Genes & Genomes BLAST (restricted) Genome Guts COG Guess INTERPROScan CDD search Pattern search Sequence Patterns COG Trees

Pyrococcus abyssi >PAB1769 mmdA methylmalonyl-coA decarboxylase, alpha chain MGMMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFGMDKRDLPADGVITGY GTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVP QITAIMGPCAGGAVYSPAIGDFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGL IKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFLELQPYFAPNAVIGFG RINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVP MVTVILRKAYGGAYLAMGSKHLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAA SRGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL

Supplementary options
Additional orf sequence data	See Genomic Environment
Search GenBank with PSI-Blast at NCBI	Search Complete Genomes DataBase with Blast at LBMGE
Search InterPro Database at LBMGE	Search CDD Database at LBMGE
Determine COG functional Category (microbial)	Determine COG functional Category (eukarial)
See this orf in P. abyssi Data Base

^__________ GenBank id: 14521095 Gene name: mmdA COG: I COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Taxon: 272844 Lineage: Archaea: Euryarchaeota: Thermococci: Thermococcales: Thermococcaceae: Pyrococcus: Pyrococcus abyssi: Pyrococcus abyssi GE5
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