Bacteriophage T5
Matches in Public DataBases
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- Push the "Search" button after entering your criteria (multiple choices are allowed).
- Boolean queries are possible with the following operators :'or', 'and', ' not'. Separate these keywords with spaces.
- Regular expressions (POSIX 1003.2) are possible with the following operators: '.' (period), '+', '*', '?', '^', '$', '{n}', "|' , '[ ]'. Do NOT separate items with spaces and choose "contains".

Orf ID: contains starts with is

(type a orf number eg : {BPHAG}T5_p042)

GenBank NR: contains starts with is

Any High Medium Low Not Hit

SWISSPROT: contains starts with is

Any High Medium Low Not Hit

HMMER PFAM: contains starts with is

Any High Medium Low Not Hit

KOG category: contains starts with is

Any Good Normal Check Suspect Not Hit

 KOG function:

Any --INFORMATION STORAGE AND PROCESSING J Translation, ribosomal structure and biogenesis A RNA processing and modification K Transcription L Replication, recombination and repair B Chromatin structure and dynamics --CELLULAR PROCESSES AND SIGNALING D Cell cycle control, cell division, chromosome partitioning Y Nuclear structure V Defense mechanisms T Signal transduction mechanisms M Cell wall/membrane/envelope biogenesis N Cell motility Z Cytoskeleton W Extracellular structures U Intracellular trafficking, secretion, and vesicular transport O Posttranslational modification, protein turnover, chaperones --METABOLISM C Energy production and conversion G Carbohydrate transport and metabolism E Amino acid transport and metabolism F Nucleotide transport and metabolism H Coenzyme transport and metabolism I Lipid transport and metabolism P Inorganic ion transport and metabolism Q Secondary metabolites biosynthesis, transport and catabolism --POORLY CHARACTERIZED R General function prediction only S Function unknown

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Item/Orf ID Match level for GenBank NR Expect value for GenBank NR best match Best match in GenBank NR Match level for Swissprot Expect value for Swissprot best match Best match in Swissprot Match level for HMMER Pfam Expect value for HMMER Pfam best match Best match in HMMER Pfam Confidence level for KOG KOG function category KOG number KOG function and pathway
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