ICON LBMGE



  

Bacteriophage T5
Genome Sequencing Project

a joint project by:

Transports Membranaires de Macromolécules, IBBMC Orsay France
LBMGE IGM, Orsay France
EAN IGM, Orsay France

T5 st0 mutant + wt insertion: sequence finished 02/04

 

  • 121446 bp total length : 113238 nt strain st0 deletion mutant + 8208 bp insertion from wt strain HER28 (Reference Center For Bacterial Viruses, Laval University, Quebec, Canada)

    GenBank accession numbers: AY692264 (st0 mutant) and AY734508 (wt insertion)

Last modification: Wednesday September 10 17:44:20 2008

 

 

Start browsing T5 chromosome:
Initial settings will display map showing full genome range ( 1-121444 nt)

 

Bacteriophage T5

Links (click to open)

Genome length

Database Status

Additionnal info

 

Complete Chromosome


opens full length genome map (1-121446 nt).
Use "Zoom in" button to narrow display range
Additionally display alignment of 2 other bacteriophage T5 strains
(GenBank acc.: AY543070 & AY587007) 

121446bp

Annotation finished
GenBank acc #:
AY692264 (113238 nt st0 mutant)
AY734508 (8208 nt wt insertion)

 Wild type strain
reconstructed sequence
Sequence revision 6

 

Access to Genome Map and Annotation data:

 

Annotation Database Search Form : search currently available annotations and more in Bacteriophage T5 database

 

Matched Database Search Form: Explore Bacteriophage T5 orfs hits in following public ressources

  • Similarity in GenBank NR protein sequence database (Jan 19, 2004)
  • Similarity in SWISSPROT protein sequence database ( release 41.O)
  • Pattern matches in Pfam (version 8) database using HMMER
  • Similarity in COG + KOG (7 eukaryal genomes) with function prediction

 

Sequences Retrieval and Mining:

 

Blast search in T5: go to blast page here

 

T5 Genome Guts : retrieve genome sequences and inner parts

 

T5 nucleotidic sequence = final sequence (revision 5)

 

T5 orfs ( > 30 aa ) 

 

T5 orfs - nucleic ( > 90 nt ) 

 

T5 repeats page - Exact direct and inverted repeats in T5 genome - Minimun size = 10nt //Direct sequence access

 

 

Problems/Questions: yvan.zivanovic@igmors.u-psud.fr