LBMGE Genomapper

Genomapper BLAST psiBLAST Mulalbla Multalin Genes & Genomes BLAST (restricted) Genome Guts COG Guess INTERPROScan CDD search Pattern search Sequence Patterns COG Trees

Pyrococcus abyssi >PAB0243 Bacterial multidrug resistance related protein MSDIRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGTLALVARRVGEKNFEE ASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKL NILMNVINAVLDYLLVFGKFGFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDIIEKILRIGTPTM LERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKPEEAERTVKEALKMTTMFM SAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRIL PAYLLGFGFEIPELSIGPFTFPGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWKKIKI

Supplementary options
Additional orf sequence data	See Genomic Environment
Search GenBank with PSI-Blast at NCBI	Search Complete Genomes DataBase with Blast at LBMGE
Search InterPro Database at LBMGE	Search CDD Database at LBMGE
Determine COG functional Category (microbial)	Determine COG functional Category (eukarial)
See this orf in P. abyssi Data Base

^__________ GenBank id: 14520582 Gene name: dinF-like COG: V COG0534 Na+-driven multidrug efflux pump Taxon: 272844 Lineage: Archaea: Euryarchaeota: Thermococci: Thermococcales: Thermococcaceae: Pyrococcus: Pyrococcus abyssi: Pyrococcus abyssi GE5
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