LBMGE Genomapper

Genomapper BLAST psiBLAST Mulalbla Multalin Genes & Genomes BLAST (restricted) Genome Guts COG Guess INTERPROScan CDD search Pattern search Sequence Patterns COG Trees

Pyrococcus abyssi >PAB0303 ABC-type transport system, ATPase component, substrate unknown MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIREG IAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKI LILDEPTSVLTPIEVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDV VMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDV TKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSG GNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGK TEEFTLEKLGLLMGGVNA

Supplementary options
Additional orf sequence data	See Genomic Environment
Search GenBank with PSI-Blast at NCBI	Search Complete Genomes DataBase with Blast at LBMGE
Search InterPro Database at LBMGE	Search CDD Database at LBMGE
Determine COG functional Category (microbial)	Determine COG functional Category (eukarial)
See this orf in P. abyssi Data Base

^__________ GenBank id: 14520669 Gene name: rbsA COG: R COG3845 ABC-type uncharacterized transport systems, ATPase components Taxon: 272844 Lineage: Archaea: Euryarchaeota: Thermococci: Thermococcales: Thermococcaceae: Pyrococcus: Pyrococcus abyssi: Pyrococcus abyssi GE5
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