LBMGE Genomapper

Genomapper BLAST psiBLAST Mulalbla Multalin Genes & Genomes BLAST (restricted) Genome Guts COG Guess INTERPROScan CDD search Pattern search Sequence Patterns COG Trees Genome Syntenizer

Pyrococcus abyssi >PAB1560 hypF hydrogenase expression/formation regulatory protein MKAYRIHVQGIVQAVGFRPFVYRIAHAHNLRGYVRNLGDAGVEIVVEGREEDIEGFLRDLYRKKPPIAKIEKVEREEIPI QGFDRFYIEKSSTEKKGEGDSIIPPDIAICEDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTAMREFPMC DFCKSEYEDPLNRRYHAEPVACPVCGPSYRLYTSDGKEITGDPLRKAAKLIDKGYIIAIKGIGGIHLACDATREDVVAEL RKRLFRPQKPFAIMAKDLETVKGFAYISREEEEELTSYRRPIVALRKREPFPLPENLAPGLHTIGVMLPYAGTHYILFHW SKTPVYVMTSANFPGMPMIKDNEEAFEKLKDVADYLLLHNRRIPNRADDSVVRFVDGRRAVIRRSRGFVPLWIEIPFEYK GLAVGAELMNAFGVAKNGKVYPSQYIGNTSKIEVLEFMREAIKHFFKILRINALDLVVADLHPNYNTTKLAMEIAEEFNA EFLQVQHHYAHVASVMAEHNLEEVVGIALDGVGYGTDGKTWGGEIIYLSYEDIERLAHLEYYPLPGGDLASYYPLRALIG ILSLNHEIEEVENTIRKFCPNAIKSLKYGETELKVILRQLSSGINVAYASSTGRVLDAFSVLLNVSYRRHYEGEPAMKLE SFASQGKNDLKLTIPVEGEEIRVSELFEEVLDLMGKASPRDIAYSIHLALARVFAEVSVEKAKEFGAKTVVLGGGVGYNE LIVKTVRKIVEGNGLKFLTTYEVPRGDNGINVGQAFLGGLYLEGYLNREDLSI

Supplementary options
Additional orf sequence data	See Genomic Environment
Search GenBank with PSI-Blast at NCBI	Search Complete Genomes DataBase with Blast at LBMGE
Search InterPro Database at LBMGE	Search CDD Database at LBMGE
Determine COG functional Category (microbial)	Determine COG functional Category (eukarial)
See this orf in P. abyssi Data Base

^__________ GenBank id: 14521439 Gene name: hypF COG: O COG0068 Hydrogenase maturation factor Taxon: 272844 Lineage: Archaea: Euryarchaeota: Thermococci: Thermococcales: Thermococcaceae: Pyrococcus: Pyrococcus abyssi: Pyrococcus abyssi GE5
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