LBMGE Genomapper

Genomapper BLAST psiBLAST Mulalbla Multalin Genes & Genomes BLAST (restricted) Genome Guts COG Guess INTERPROScan CDD search Pattern search Sequence Patterns COG Trees

Pyrococcus abyssi >PAB2410 rpoD DNA-directed RNA polymerase, subunit D MVEIKILKKTDDSITFILEGVDVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHRLAMIPLKTPVDRFELDAL ELDDYTVTLSLEAEGPGIVYSGDLKSDDPDVKPANPDIPIVKLAKGQRLVFNAFAKLGRGKDHAKWQPGFTYYKYFTRIH ISKEIEGWEKLKKLAKKRGLPVKENENEVIVETIKPFYIPKEFEEYEGKGIWEEIVPNTYVFVVETNGELPVEEIVKIAL KILMRKADRFINELQGLAG

Supplementary options
Additional orf sequence data	See Genomic Environment
Search GenBank with PSI-Blast at NCBI	Search Complete Genomes DataBase with Blast at LBMGE
Search InterPro Database at LBMGE	Search CDD Database at LBMGE
Determine COG functional Category (microbial)	Determine COG functional Category (eukarial)
See this orf in P. abyssi Data Base

^__________ GenBank id: 14520746 Gene name: rpoD COG: K COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit Taxon: 272844 Lineage: Archaea: Euryarchaeota: Thermococci: Thermococcales: Thermococcaceae: Pyrococcus: Pyrococcus abyssi: Pyrococcus abyssi GE5
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