Sulfolobus solfataricus P2 complete genome sequencing project

Homed at LBMGE Orsay, France


This is a joint European/Canadian project

• Microbial Genome Group, Institute of Molecular Biology, University of Copenhagen, Sølvgade 83H, DK-1307 Copenhagen, Denmark
• Université Paris-Sud, Institut de Génétique et Microbiologie, 15, Rue Georges Clemenceau, Batiment 400, FR-91405 Orsay Cedex, France
• Wageningen University, Laboratory of Microbiology, Hesselink van Suchtelenweg 4, NL-6703 CT, Wageningen, The Netherlands
• National Research Council of Canada, Institute for Marine Biosciences, 1411 Oxford St, Halifax, NS, Canada B3H 3Z1
• University of Ottawa, Department of Biology, 30 Marie Curie, Ottawa, ON K1N 6N5, Canada
• Novozymes, Novo Alle, DK-2880 Bagsværd, Denmark


Click in desired region on the map above



A map of Sulfolobus solfataricus P2 Gene Functional categories

if you cannot access a region with this map go here

The complete genome of the Crenarchaeote Sulfolobus solfataricus P2
Qunxin She, Rama K. Singh, Fabrice Confalonieri, Yvan Zivanovic, Ghislaine Allard, Mariana J. Awayez, Christina C-Y Chan-Weiher, Ib Groth Clausen, Bruce A. Curtis, Anick De Moors, Gael Erauso, Cynthia Fletcher, Paul M. K. Gordon, Ineke Heikamp-de Jong, Alex C. Jeffries, Catherine J. Kozera, Nadine Medina, Xu Peng, Hoa Phan Thi-Ngoc, Peter Redder, Margaret E. Schenk, Cynthia Theriault, Niels Tolstrup, Robert L. Charlebois, W. Ford Doolittle, Michel Duguet, Terry Gaasterland, Roger A. Garrett, Mark A. Ragan, Christoph W. Sensen and John Van der Oost

Submitted to PNAS Feb., 2001

Published in Proc. Natl. Acad. Sci. USA, Vol. 98, Issue 14, 7835-7840, July 3, 2001

GenBank accession number
AE006641


Supported by:
European grant BIO4CT-960270.
Canadian Genome Analysis and Technology Program (grant GO12319)
National Research Council of Canada (Institute for Marine Biosciences)

R.L. Charlebois    rlcharl@home.com
F.   Confalonieri  confalonieri@igmors.u-psud.fr
W.F. Doolittle     ford@is.dal.ca
M.   Duguet        duguet@igmors.u-psud.fr
R.A. Garrett       garrett@mermaid.molbio.ku.dk
M.A. Ragan         m.ragan@imb.uq.edu.au
Q.   She           qunxin@mermaid.molbio.ku.dk
R.K. Singh         rama.singh@nrc.ca
J.   Van der Oost  john.vanderoost@algemeen.micr.wau.nl
Y.   Zivanovic     yvan.zivanovic@u-psud.fr


Contact for this database : yvan.zivanovic@u-psud.fr.

Link to database in Canada : http://niji.imb.nrc.ca/sulfhome/


Sequence:

Annotation:


  • P2 full genome
    complete most recent genome sequence [nucleic]
  • P2 Genes [amino]:
    Genes and their most recent annotation, fasta format
  • P2 Genes [nucleic]:
    Genes and RNA elements in their most recent annotation, fasta forrmat
  • Blast_Search in P2 Genome
    for BLASTing P2 genome (and others), local server in Orsay.
  • P2 sequence & orfs retrieval
    Access to nucleic and amino sequences of orfs, orfs location and genomic sequence spanning specific range
  • Frameshifts
    list of putative frameshifts identified in Orsay
  • Genomes & Genes
    Multi-purpose gene and annotation retriever
    This is where you can instantly retrieve any gene sequence (Sulfolobus, as well as any other gene from our local complete genomes database


  • Annotation_Search_Form
    Search Sulfolobus P2 annotation DataBase . Multiple search criteria are possible
  • Full annotation
    complete list of all annotations currently available.
    Annotation is finished
    in public databases under accession number AE006641
  • P2 Gene functional categories
    Sulfolobus P2 genes arranged by functional categories.
  • COG hits
    a list of Sulfolobus P2 complete genes vs
    COG database , with function prediction.
  • pI and MW
    Some physical constants.

Extra features:


 

Otherwise select a region below: 

    1 to 100kb       100 to 200kb      200 to 300kb      300 to 400kb      400 to 500kb
    500 to 600kb      600 to 700kb      700 to 800kb      800 to 900kb     900 to 1000kb
1000 to 1100kb   1100 to 1200kb   1200 to 1300kb   1300 to 1400kb   1400 to 1500kb 
1500 to 1600kb   1600 to 1700kb   1700 to 1800kb   1800 to 1900kb   1900 to 2000kb
2000 to 2100kb   2100 to 2200kb   2200 to 2300kb   2300 to 2400kb   2400 to 2500kb
2500 to 2600kb   2600 to 2700kb   2700 to 2800kb   2800 to 2900kb   2900 to 3000kb

 

 

 

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