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Acidobacteria BLAST Query Page


GAPPED-BLAST search in LBMGE Genomes DataBase.

Similarity searches are performed with GAPPED-BLAST (BLAST 2.2.3 [May-13-2002] NCBI, Altschul et al., 1997, Nucleic Acids Res. 25:3389-3402)
Submit your sequence and select the Genome DataBase and sequence type you want to match.



 

 

Acidobacteria Home Page

 


Acidobacteria  Clones & Complete Genomes

Select all    clear all   
Acidobacteria bacterium Ellin345 AY281357S2 L35504_KM3_187_G1
Solibacter usitatus Ellin6076 AY214600 L35505_KM3_18_F8
AY281352 L35_B8_D2 L35507_KM3_205_D9
AY281353 L35480_AD106_G4 L35509_KM3_25_B4
AY281354 L35496_AD370_D1 L35516_KM4_9_H7
AY281355 L35893_AD248_D7 L35498_AD55_D2
AY281356 L35501KM317A5c2 L35511_KM3_47_B8
AY281357S1 L35501KM3173A5c1

choose the correct tool for each database

Enter your sequence here:

Select at least one Genome DataBase and the appropriate tool and type your query sequence below

 

   Display full alignements in graphics


Output Alignment: (options not available with blastx and tblastx)

Select DataBase Type:

 

 


(n= Nucleic ) (a= Amino )

blastn: n<->n 
blastp: a<->a 
blastx: n<->a  

tblastn: a<->n 
tblastx: n<->n

 

 

Select Groups of Genomes:

Select Genomes within groups:

 

 

 

 

   

 

 

 

 

 

 

 

 

Bacteriophages complete genomes

 

 


 

Blast Advanced Options:

 

 

Expect value (E)

  [Real] 

 

 

Matrix

 

 

 

Filter query sequence (DUST with blastn, SEG with others)

 

 

 

Word Size   [Integer]

Cost to open a gap

  [Integer]

 

 

Cost to extend a gap

  [Integer]

 

 

X dropoff value for gapped alignment (in bits)

  [Integer]

 

 

Reward for a nucleotide match

  [Integer] (blastn only)

 

 

Number of one-line descriptions (V)

  [Integer]

 

 

Number of alignments to show (B)

  [Integer]

 

 

Threshold for extending hits

  [Integer]

 

 

Penalty for a nucleotide mismatch (blastn only)

  [Integer]

  

 

Perform gapped alignment

  (not available with tblastx)

 

 

 

 

 




 

 

 

Genome list last revision on Friday February 29 2008




DataBase administrator

Laboratoire de Biologie Moléculaire du Gène chez les Extrêmophiles.