Acidobacteria BLAST Query Page

GAPPED-BLAST search in LBMGE Genomes DataBase.

Similarity searches are performed with GAPPED-BLAST (BLAST 2.2.3 [May-13-2002] NCBI, Altschul et al., 1997, Nucleic Acids Res. 25:3389-3402)
Submit your sequence and select the Genome DataBase and sequence type you want to match.



Acidobacteria Home Page


Acidobacteria  Clones & Complete Genomes

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Acidobacteria bacterium Ellin345 AY281357S2 L35504_KM3_187_G1
Solibacter usitatus Ellin6076 AY214600 L35505_KM3_18_F8
AY281352 L35_B8_D2 L35507_KM3_205_D9
AY281353 L35480_AD106_G4 L35509_KM3_25_B4
AY281354 L35496_AD370_D1 L35516_KM4_9_H7
AY281355 L35893_AD248_D7 L35498_AD55_D2
AY281356 L35501KM317A5c2 L35511_KM3_47_B8
AY281357S1 L35501KM3173A5c1

choose the correct tool for each database

Enter your sequence here:

Select at least one Genome DataBase and the appropriate tool and type your query sequence below


   Display full alignements in graphics

Output Alignment: (options not available with blastx and tblastx)

Select DataBase Type:



(n= Nucleic ) (a= Amino )

blastn: n<->n 
blastp: a<->a 
blastx: n<->a  

tblastn: a<->n 
tblastx: n<->n



Select Groups of Genomes:

Select Genomes within groups:














Bacteriophages complete genomes




Blast Advanced Options:



Expect value (E)








Filter query sequence (DUST with blastn, SEG with others)




Word Size   [Integer]

Cost to open a gap




Cost to extend a gap




X dropoff value for gapped alignment (in bits)




Reward for a nucleotide match

  [Integer] (blastn only)



Number of one-line descriptions (V)




Number of alignments to show (B)




Threshold for extending hits




Penalty for a nucleotide mismatch (blastn only)




Perform gapped alignment

  (not available with tblastx)









Genome list last revision on Friday February 29 2008

DataBase administrator

Laboratoire de Biologie Moléculaire du Gène chez les Extrêmophiles.