Bacteriophage T5 Query Page

GAPPED-BLAST search in LBMGE Genomes DataBase.

Similarity searches are performed with GAPPED-BLAST (BLAST 2.2.3 [May-13-2002] NCBI, Altschul et al., 1997, Nucleic Acids Res. 25:3389-3402)
Submit your sequence and select the Genome DataBase and sequence type you want to match.


T5 Homepage


Bacteriophage T5    
Wild type strain reconstructed genome (st0 deletion mutant + wt insertion; AY692264 & AY734508)
choose the correct tool for each database (n= Nucleic ) (a= Amino )

Enter your sequence here:

Select additional Genome DataBase and the appropriate tool and type your query sequence below

   Display full alignements in graphics

Output Alignment: (options not available with blastx and tblastx)


Select DataBase Type:



(n= Nucleic ) (a= Amino )

blastn: n<->n 
blastp: a<->a 
blastx: n<->a  

tblastn: a<->n 
tblastx: n<->n



Select Groups of Genomes:

Select Genomes within groups:














Bacteriophages complete genomes




Blast Advanced Options:



Expect value (E)








Filter query sequence (DUST with blastn, SEG with others)




Cost to open a gap




Cost to extend a gap




X dropoff value for gapped alignment (in bits)




Reward for a nucleotide match

  [Integer] (blastn only)



Number of one-line descriptions (V)




Number of alignments to show (B)




Threshold for extending hits




Penalty for a nucleotide mismatch (blastn only)




Perform gapped alignment

  (not available with tblastx)









Genome list last revision on Friday February 29 2008

DataBase administrator

Laboratoire de Biologie Moléculaire du Gène chez les Extrêmophiles.