ICON LBMGE



   K. lactis annotation database entry page

 

 Current assembly status  : the sequence is finished : released 09/03
Last news  :
- genes cross-reference 09/17/04
- ADDed intron/ exon information (from embl records) 09/20/04
- ADDed tRNA information 09/21/04


GENERAL INFO

 

 

# of contigs

Size

# of orfs (40 aa and more)

Currently annotated

 

Chromosome I

1

1062590

3167

521

 

Chromosome II

1

1320834

3851

653

 

Chromosome III

1

1753957

4951

858

 

Chromosome IV

1

1715506

4999

845

 

Chromosome V

1

2234072

6513

1100

 

Chromosome VI

1

2602197

7461

1226

 

Mitochondria

1

40291

427

 -

 

TOTAL

6

10729447

31369

5203

 

TOOLS FOR ANNOTATION

 

ANNOTATION DATABASEs open for annotation to authorized contributors

 

BLAST SEARCH in K. lactis sequence: final sequence revision is online

 

K. LACTIS ANNOTATION GUIDELINES : a Shorthand "User Manual" for using K. lactis annotation database.

 

ANNOTATION SEARCH QUERY PAGE : mining of annotated genes

 

MATCHED DATABASE SEARCH QUERY PAGE : mining of K. lactis orfs matches in public sequnece databases

 

CROSS REFERENCE PAGE : K. lactis cross-reference of genes nomenclature in various databases

 

SEQUENCES

 

Complete sequences final sequence revision

 

Retrieval of genome sequences and inner parts: K. lactis guts

 

Complete sequences from 10X 02/05/03 release (Obsolete)

 

BAC ends sequences (screened)

 

3X assembly contigs sequences

 

RST sequences

Preliminary "automatic-annotation"

 

10X 02/05/03 release :Preliminary analysis on this 30727 orfs set = match list with Yeast/ C. albican & SWISSPROT+ TrEMBL databases.

 

10X 02/05/03 release automatically annotated genes (Query form page)

 

VARIOUS INFO

 

Forum / Discussion page Forum open to all discussions between annotators community

 

Please take note: this is the final -last- sequence version. ORFs nomenclature has changed, as we don't maintain backward compatibility for this database. Accordingly, older versions numbering is DISCONTINUED (exept for chromosome I which was already finished in the previous release). Older sequence versions are left accessible as a convenience, but should not be used anymore.

 

Please take note: preliminary (semi-automatic ) annotation performed on 10X 02/05/03 release has been incorporated in this database

 

WARNING: ORF NUMBERING IS CHANGING WITH THIS VERSION