K. lactis Query Page

GAPPED-BLAST search in LBMGE Genomes DataBase.

Similarity searches are performed with GAPPED-BLAST (BLAST 2.2.3 [May-13-2002] NCBI, Altschul et al., 1997, Nucleic Acids Res. 25:3389-3402)


Kluyveromyces lactis Homepage


K. lactis  Final Assembly (09/03) online   

 Please take note: this is the final -last- sequence version. ORFs nomenclature has changed, as we don't maintain backward compatibility for this database. Accordingly, older versions numbering is DISCONTINUED (exept for chromosome I which was already finished in the previous release). Older sequence versions are left accessible as a convenience, but should not be used anymore.

choose the correct tool for each database (n= Nucleic ) (a= Amino )
Enter your sequence here:

Select at least one Genome DataBase and the appropriate tool and type your query sequence below

   Display full alignements in graphics

Output Alignment: (options not available with blastx and tblastx)


 Select DataBase Type:



(n= Nucleic ) (a= Amino )

blastn: n<->n 
blastp: a<->a 
blastx: n<->a  

tblastn: a<->n 
tblastx: n<->n



Select Groups of Genomes:

Select Genomes within groups:














Bacteriophages complete genomes



You can select genomes by groups or individually .
Check one or several checkboxes to toggle selected groups. (Javascript must be activated-)



Blast Advanced Options:



Expect value (E)








Filter query sequence (DUST with blastn, SEG with others)




Cost to open a gap




Cost to extend a gap




X dropoff value for gapped alignment (in bits)




Reward for a nucleotide match

  [Integer] (blastn only)



Number of one-line descriptions (V)




Number of alignments to show (B)




Threshold for extending hits




Penalty for a nucleotide mismatch (blastn only)




Perform gapped alignment

  (not available with tblastx)









Genome list last revision on Friday February 29 2008

DataBase administrator

Laboratoire de Biologie Moléculaire du Gène chez les Extrêmophiles.