Verrucobacteria & other clones BLAST Query Page

GAPPED-BLAST search in LBMGE Genomes DataBase.

Similarity searches are performed with GAPPED-BLAST (BLAST 2.2.3 [May-13-2002] NCBI, Altschul et al., 1997, Nucleic Acids Res. 25:3389-3402)
Submit your sequence and select the Genome DataBase and sequence type you want to match.

Genomapper BLAST  psiBLAST  Mulalbla  Multalin  Genes & Genomes  BLAST (restricted)  Genome Guts  COG Guess  INTERPROScan  CDD search  Pattern search  Sequence Patterns  COG Trees  Genome Syntenizer

Verrucobacteria and other clones Home Page

Nucleotidic complete sequences Orfs [amino] sequences Orfs [nucleic] sequences -- -- BLASTP BLASTN BLASTX TBLASTN TBLASTX choose the correct tool for each database

Enter your sequence here:

Select at least one Genome DataBase and the appropriate tool and type your query sequence below

Genome (n) orfs (a) orfs (n) orfs (a) -full
(n= Nucleic ) (a= Amino )

blastn: n<->n 
blastp: a<->a 
blastx: n<->a  

tblastn: a<->n 
tblastx: n<->n

Select Genomes within groups:

Bacteriophages complete genomes

Genome (n) orfs (a) orfs (n) --

Blast Advanced Options:

Expect value (E)

  [Real] 

Matrix

  BLOSUM30 BLOSUM35 BLOSUM40 BLOSUM45 BLOSUM50 BLOSUM55 BLOSUM60 BLOSUM62 BLOSUM65 BLOSUM70 BLOSUM75 BLOSUM80 BLOSUM85 BLOSUM90 PAM40 PAM120 PAM250

Filter query sequence (DUST with blastn, SEG with others)

  True False

Cost to open a gap

  [Integer]

Cost to extend a gap

  [Integer]

X dropoff value for gapped alignment (in bits)

  [Integer]

Reward for a nucleotide match

  [Integer] (blastn only)

Number of one-line descriptions (V)

  [Integer]

Number of alignments to show (B)

  [Integer]

Threshold for extending hits

  [Integer]

Penalty for a nucleotide mismatch (blastn only)

  [Integer]

Perform gapped alignment

  True False (not available with tblastx)

Genomapper BLAST  psiBLAST  Mulalbla  Multalin  Genes & Genomes  BLAST (restricted)  Genome Guts  COG Guess  INTERPROScan  CDD search  Pattern search  Sequence Patterns  COG Trees  Genome Syntenizer