ICON LBMGE





Verrucobacteria & other clones BLAST Query Page


GAPPED-BLAST search in LBMGE Genomes DataBase.

Similarity searches are performed with GAPPED-BLAST (BLAST 2.2.3 [May-13-2002] NCBI, Altschul et al., 1997, Nucleic Acids Res. 25:3389-3402)
Submit your sequence and select the Genome DataBase and sequence type you want to match.


 Genomapper BLAST  psiBLAST  Mulalbla  Multalin  Genes & Genomes  BLAST (restricted)  Genome Guts  COG Guess  INTERPROScan  CDD search  Pattern search  Sequence Patterns  COG Trees  Genome Syntenizer

 

Verrucobacteria and other clones Home Page


Verrucobacteria and other clones & Complete Genomes

Select all    clear all   
Clone AD12-A11 Clone AD17-E3 Clone AD45-G12 Clone AD66-C11
Clone AD106-G5 Clone AD243-C9 Clone AD249-B8 Clone AD254-A9
Clone AD257-B4 Clone AD261-B2 Clone AD264-E4 Clone SAT52-B4

choose the correct tool for each database

Enter your sequence here:

Select at least one Genome DataBase and the appropriate tool and type your query sequence below

   Display full alignements in graphics


Output Alignment: (options not available with blastx and tblastx)

Select DataBase Type:


(n= Nucleic ) (a= Amino )

blastn: n<->n 
blastp: a<->a 
blastx: n<->a  

tblastn: a<->n 
tblastx: n<->n

Select Groups of Genomes:

Select Genomes within groups:

 

Bacteriophages complete genomes


Blast Advanced Options:

Expect value (E)

  [Real] 

Matrix

 

Filter query sequence (DUST with blastn, SEG with others)

 

Word Size   [Integer]

Cost to open a gap

  [Integer]

Cost to extend a gap

  [Integer]

X dropoff value for gapped alignment (in bits)

  [Integer]

Reward for a nucleotide match

  [Integer] (blastn only)

Number of one-line descriptions (V)

  [Integer]

Number of alignments to show (B)

  [Integer]

Threshold for extending hits

  [Integer]

Penalty for a nucleotide mismatch (blastn only)

  [Integer]

Perform gapped alignment

  (not available with tblastx)

 


 Genomapper BLAST  psiBLAST  Mulalbla  Multalin  Genes & Genomes  BLAST (restricted)  Genome Guts  COG Guess  INTERPROScan  CDD search  Pattern search  Sequence Patterns  COG Trees  Genome Syntenizer

 

 

Genome list last revision on Wed Feb 11 2009 13:10:06




DataBase administrator

Laboratoire de Biologie Moléculaire du Gène chez les Extrêmophiles.